The Ilana and Pascal Mantoux Institute for Bioinformatics supports integrated data analysis from all units within the Grand-INCPM.
We can also analyse a wide range of NGS data from other facilities and/or public repositories.
RNA-seq
• Quantification of gene expression.
• Differential expression and splicing.
• Pathway enrichment including a unique collaboration with GeneCards®.
Variant Calling
• Whole genome or whole exome.
• Structural variants and copy number variations (CNVs).
• Germline and Somatic.
Single Cell RNA-Seq
• UMI based (e.g. 10x Genomics) or whole transcript (e.g. SMARTseq2).
• Clustering and visualization of cell populations.
• Differential expression.
Bacterial genome assembly
• Assembly of bacterial genomes and plasmids.
• Combining long and short reads.
• Annotation and protein prediction.
Custom applications
Cannot find a desired application? We support tailored analyses. Examples: RRBS Methylation, transcriptome assembly, variant calling from RNA-Seq and other custom analyses.