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All Publications

  • Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules

    Zviran A., Mor N., Rais Y. et al., Gingold H., Peles S., Chomsky E., Viukov S., Buenrostro J. D., Scognamiglio R., Weinberger L., Manor Y. S., Krupalnik V., Zerbib M., Hezroni H., Jaitin D. A., Larastiaso D., Gilad S., Benjamin S., Gafni O., Mousa A., Ayyash M., Sheban D., Bayerl J., Aguilera-Castrejon A., Massarwa R., Maza I., Hanna S., Stelzer Y., Ulitsky I., Greenleaf W. J., Tanay A., Trumpp A., Amit I., Pilpel Y., Novershtern N., Hanna J. H. (2019), Cell Stem Cell. 24, 2, p. 328-341.e9   |  All authors

  • mRNA-seq whole transcriptome profiling of fresh frozen versus archived fixed tissues

    Ben-Moshe N. B., Gilad S., Perry G. et al., Benjamin S., Balint-Lahat N., Pavlovsky A., Halperin S., Markus B., Yosepovich A., Barshack I., Gal-Yam E. N., Domany E., Kaufman B., Dadiani M. (2018), BMC Genomics. 19, 419   |  All authors

  • High Expression of CD200 and CD200R1 Distinguishes Stem and Progenitor Cell Populations within Mammary Repopulating Units

    Rauner G., Kudinov T., Gilad S. et al., Hornung G., Barash I. (2018), Stem Cell Reports. 11, 1, p. 288-302   |  All authors

  • A brief review of single-cell transcriptomic technologies

    Kalisky T., Oriel S., Bar-Lev T. H. et al., Ben-Haim N., Trink A., Wineberg Y., Kanter I., Gilad S., Pyne S. (2018), Briefings in Functional Genomics. 17, 1, p. 64-76   |  All authors

  • Quantitative species-level ecology of reef fish larvae via metabarcoding

    Kimmerling N., Zuqert O., Amitai G. et al., Gurevich T., Armoza-Zvuloni R., Kolesnikov I., Berenshtein I., Melamed S., Gilad S., Benjamin S., Rivlin A., Ohavia M., Paris C. B., Holzman R., Kiflawi M., Sorek R. (2018), Nature ecology & evolution. 2, 2, p. 306-+   |  All authors

  • Evolution and dissemination of the Klebsiella pneumoniae clonal group 258 throughout Israeli post-acute care hospitals, 2008-13

    Adler A., Lifshitz Z., Gordon M. et al., Ben-David D., Khabra E., Masarwa S., Zion O., Schwaber M. J., Carmeli Y. (2017), Journal of Antimicrobial Chemotherapy. 72, 8, p. 2219-2224   |  All authors

  • Coordination of Meristem Doming and the Floral Transition by Late Termination, a Kelch Repeat Protein

    Tal L., Friedlander G., Gilboa N. S. et al., Unger T., Gilad S., Eshed Y. (2017), Plant Cell. 29, 4, p. 681-696   |  All authors

  • RNA sequencing of bipolar disorder lymphoblastoid cell lines implicates the neurotrophic factor HRP-3 in lithium's clinical efficacy

    Milanesi E., Voinsky I., Hadar A. et al., Srouji A., Maj C., Shekhtman T., Gershovits M., Gilad S., Chillotti C., Squassina A., Potash J. B., Schulze T. G., Goes F. S., Zandi P., Kelsoe J. R., Gurwitz D. (2017), World Journal of Biological Psychiatry. p. 449-461   |  All authors

  • High-Resolution Dissection of Conducive Reprogramming Trajectory to Ground State Pluripotency

    Zviran A., Mor N., Rais Y. et al., Gingold H., Peles S., Chomsky E., Viukov S., Buenrostro J. D., Weinberger L., Manor Y. S., Krupalnik V., Zerbib M., Hezroni H., Jaitin D. A., Larastiaso D., Gilad S., Benjamin S., Mousa A., Ayyash M., Sheban D., Bayerl J., Aguilera Castrejon A., Massarwa R., Maza I., Hanna S., Amit I., Stelzer Y., Ulitsky I., Greenleaf W. J., Pilpel Y., Novershtern N., Hanna J. H. (2017), BioRxiv.   |  All authors

  • Derivation of novel human ground state naive pluripotent stem cells (vol 504, pg 282, 2013)

    Gafni O., Weinberger L., Mansour A. A. et al., Manor Y. S., Chomsky E., Ben-Yosef D., Kalma Y., Viukov S., Maza I., Zviran A., Rais Y., Shipony Z., Mukamel Z., Krupalnik V., Zerbib M., Geula S., Caspi I., Schneir D., Shwartz T., Gilad S., Amann-Zalcenstein D., Benjamin S., Amit I., Tanay A., Massarwa R., Novershtern N., Hanna J. H. (2015), Nature. 520, 7549   |  All authors

  • Deterministic direct reprogramming of somatic cells to pluripotency (vol 502, pg 65, 2013)

    Rais Y., Zviran A., Geula S. et al., Gafni O., Chomsky E., Viukov S., Mansour A. A., Caspi I., Krupalnik V., Zerbib M., Maza I., Mor N., Baran D., Weinberger L., Jaitin D. A., Lara-Astiaso D., Blecher-Gonen R., Shipony Z., Mukamel Z., Hagai T., Gilad S., Amann-Zalcenstein D., Tanay A., Amit I., Novershtern N., Hanna J. H. (2015), Nature. 520, 7549, p. 710-710   |  All authors

  • Simultaneous measurement of genome-wide transcription elongation speeds and rates of RNA polymerase II transition into active elongation with 4sUDRB-seq

    Fuchs G., Voichek Y., Rabani M. et al., Benjamin S., Gilad S., Amit I., Oren M. (2015), Nature Protocols. 10, 4, p. 605-618   |  All authors

  • Artificial Sweeteners Induce Glucose Intolerance by Altering the Gut Microbiota: Editorial comment

    Suez J., Korem T., Zeevi D. et al., Zilberman-Schapira G., Thaiss C. A., Maza O., Israeli D., Zmora N., Gilad S., Weinberger A., Kuperman Y., Harmelin A., Kolodkin-Gal I., Shapiro H., Halpern Z., Segal E., Elinav E. (2015), Obstetrical & Gynecological Survey. 70, 1, p. 31-32   |  All authors

  • Artificial sweeteners induce glucose intolerance by altering the gut microbiota

    Suez J., Korem T., Zeevi D. et al., Zilberman-Schapira G., Thaiss C. A., Maza O., Israeli D., Zmora N., Gilad S., Weinberger A., Kuperman Y., Harmelin A., Kolodkin-Gal I., Shapiro H., Halpern Z., Segal E., Elinav E. (2014), Nature. 514, 7521, p. 181-186   |  All authors

  • 4sUDRB-seq: measuring genomewide transcriptional elongation rates and initiation frequencies within cells

    Fuchs G., Voichek Y., Benjamin S. et al., Gilad S., Amit I., Oren M. (2014), GENOME BIOLOGY. 15, 5, R69   |  All authors

  • Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis

    Thaiss C. A., Zeevi D., Levy M. et al., Zilberman-Schapira G., Suez J., Tengeler A. C., Abramson L., Katz M. N., Korem T., Zmora N., Kuperman Y., Biton I., Gilad S., Harmelin A., Shapiro H., Halpern Z., Segal E., Elinav E. (2014), Cell. 159, 3, p. 514-529   |  All authors

  • Derivation of novel human ground state naive pluripotent stem cells

    Gafni O., Weinberger L., Mansour A. A. et al., Manor Y. S., Chomsky E., Ben-Yosef D., Kalma Y., Viukov S., Maza I., Zviran A., Rais Y., Shipony Z., Mukamel Z., Krupalnik V., Zerbib M., Geula S., Caspi I., Schneir D., Shwartz T., Gilad S., Amann Zalcenstein D., Benjamin S., Amit I., Tanay A., Massarwa R., Novershtern N., Hanna J. (. (2013), Nature. 504, 7479, p. 282-286   |  All authors

  • Alternative Splicing Regulates Biogenesis of miRNAs Located across Exon-Intron Junctions

    Melamed Z., Levy A., Ashwal-Fluss R. et al., Lev-Maor G., Mekahel K., Atias N., Gilad S., Sharan R., Levy C., Kadener S., Ast G. (2013), Molecular Cell. 50, 6, p. 869-881   |  All authors

  • Deterministic direct reprogramming of somatic cells to pluripotency

    Rais Y., Zviran A., Geula S. et al., Gafni O., Chomsky E., Viukov S., Mansour A. A., Caspi I., Krupalnik V., Zerbib M., Maza I., Mor N., Baran D., Weinberger L., Jaitin D. A., Lara Astiaso A. D., Blecher-Gonen R., Shipony Z., Mukamel Z., Hagai T., Gilad S., Amann Zalcenstein D., Tanay A., Amit I., Novershtern N., Hanna J. (. (2013), Nature. 502, 7469, p. 65-+   |  All authors

  • Methods and compositions for diagnosing complications of pregnancy

    Goren Y., Gilad S., Hod M. et al., Yogev Y. (2013),   |  All authors

  • Classification of the Four Main Types of Lung Cancer Using a MicroRNA-Based Diagnostic Assay

    Gilad S., Lithwick-Yanai G., Barshack I. et al., Benjamin S., Krivitsky I., Edmonston T. B., Bibbo M., Thurm C., Horowitz L., Huang Y., Feinmesser M., Hou J. S., St Cyr B., Burnstein I., Gibori H., Dromi N., Sanden M., Kushnir M., Aharonov R. (2012), Journal of Molecular Diagnostics. 14, 5, p. 510-517   |  All authors

  • Vaccinia virus infection suppresses the cell microRNA machinery

    Grinberg M., Gilad S., Meiri E. et al., Levy A., Isakov O., Ronen R., Shomron N., Bentwich Z., Shemer-Avni Y. (2012), Archives of Virology. 157, 9, p. 1719-1727   |  All authors