All Publications

  • Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules

    Zviran A., Mor N., Rais Y., Gingold H., Peles S., Chomsky E., Viukov S., Buenrostro J. D., Scognamiglio R., Weinberger L., Manor Y. S., Krupalnik V., Zerbib M., Hezroni H., Jaitin D. A., Larastiaso D., Gilad S., Benjamin S., Gafni O., Mousa A., Ayyash M., Sheban D., Bayerl J., Aguilera-Castrejon A., Massarwa R., Maza I., Hanna S., Stelzer Y., Ulitsky I., Greenleaf W. J., Tanay A., Trumpp A., Amit I., Pilpel Y., Novershtern N. & Hanna J. H. (2019)
  • mRNA-seq whole transcriptome profiling of fresh frozen versus archived fixed tissues

    Ben-Moshe N. B., Gilad S., Perry G., Benjamin S., Balint-Lahat N., Pavlovsky A., Halperin S., Markus B., Yosepovich A., Barshack I., Gal-Yam E. N., Domany E., Kaufman B. & Dadiani M. (2018)
  • High Expression of CD200 and CD200R1 Distinguishes Stem and Progenitor Cell Populations within Mammary Repopulating Units

    Rauner G., Kudinov T., Gilad S., Hornung G. & Barash I. (2018)
  • A brief review of single-cell transcriptomic technologies

    Kalisky T., Oriel S., Bar-Lev T. H., Ben-Haim N., Trink A., Wineberg Y., Kanter I., Gilad S. & Pyne S. (2018)
  • Quantitative species-level ecology of reef fish larvae via metabarcoding

    Kimmerling N., Zuqert O., Amitai G., Gurevich T., Armoza-Zvuloni R., Kolesnikov I., Berenshtein I., Melamed S., Gilad S., Benjamin S., Rivlin A., Ohavia M., Paris C. B., Holzman R., Kiflawi M. & Sorek R. (2018)
  • Evolution and dissemination of the Klebsiella pneumoniae clonal group 258 throughout Israeli post-acute care hospitals, 2008-13

    Adler A., Lifshitz Z., Gordon M., Ben-David D., Khabra E., Masarwa S., Zion O., Schwaber M. J. & Carmeli Y. (2017)
  • Coordination of Meristem Doming and the Floral Transition by Late Termination, a Kelch Repeat Protein

    Tal L., Friedlander G., Gilboa N. S., Unger T., Gilad S. & Eshed Y. (2017)
  • RNA sequencing of bipolar disorder lymphoblastoid cell lines implicates the neurotrophic factor HRP-3 in lithium's clinical efficacy

    Milanesi E., Voinsky I., Hadar A., Srouji A., Maj C., Shekhtman T., Gershovits M., Gilad S., Chillotti C., Squassina A., Potash J. B., Schulze T. G., Goes F. S., Zandi P., Kelsoe J. R. & Gurwitz D. (2017)
  • High-Resolution Dissection of Conducive Reprogramming Trajectory to Ground State Pluripotency

    Zviran A., Mor N., Rais Y., Gingold H., Peles S., Chomsky E., Viukov S., Buenrostro J. D., Weinberger L., Manor Y. S., Krupalnik V., Zerbib M., Hezroni H., Jaitin D. A., Larastiaso D., Gilad S., Benjamin S., Mousa A., Ayyash M., Sheban D., Bayerl J., Aguilera Castrejon A., Massarwa R., Maza I., Hanna S., Amit I., Stelzer Y., Ulitsky I., Greenleaf W. J., Pilpel Y., Novershtern N. & Hanna J. H. (2017)
  • Derivation of novel human ground state naive pluripotent stem cells (vol 504, pg 282, 2013)

    Gafni O., Weinberger L., Mansour A. A., Manor Y. S., Chomsky E., Ben-Yosef D., Kalma Y., Viukov S., Maza I., Zviran A., Rais Y., Shipony Z., Mukamel Z., Krupalnik V., Zerbib M., Geula S., Caspi I., Schneir D., Shwartz T., Gilad S., Amann-Zalcenstein D., Benjamin S., Amit I., Tanay A., Massarwa R., Novershtern N. & Hanna J. H. (2015)
  • Deterministic direct reprogramming of somatic cells to pluripotency (vol 502, pg 65, 2013)

    Rais Y., Zviran A., Geula S., Gafni O., Chomsky E., Viukov S., Mansour A. A., Caspi I., Krupalnik V., Zerbib M., Maza I., Mor N., Baran D., Weinberger L., Jaitin D. A., Lara-Astiaso D., Blecher-Gonen R., Shipony Z., Mukamel Z., Hagai T., Gilad S., Amann-Zalcenstein D., Tanay A., Amit I., Novershtern N. & Hanna J. H. (2015)
  • Simultaneous measurement of genome-wide transcription elongation speeds and rates of RNA polymerase II transition into active elongation with 4sUDRB-seq

    Fuchs G., Voichek Y., Rabani M., Benjamin S., Gilad S., Amit I. & Oren M. (2015)
  • Artificial Sweeteners Induce Glucose Intolerance by Altering the Gut Microbiota EDITORIAL COMMENT

    Suez J., Korem T., Zeevi D., Zilberman-Schapira G., Thaiss C. A., Maza O., Israeli D., Zmora N., Gilad S., Weinberger A., Kuperman Y., Harmelin A., Kolodkin-Gal I., Shapiro H., Halpern Z., Segal E. & Elinav E. (2015)
  • Artificial sweeteners induce glucose intolerance by altering the gut microbiota

    Suez J., Korem T., Zeevi D., Zilberman-Schapira G., Thaiss C. A., Maza O., Israeli D., Zmora N., Gilad S., Weinberger A., Kuperman Y., Harmelin A., Kolodkin-Gal I., Shapiro H., Halpern Z., Segal E. & Elinav E. (2014)
  • 4sUDRB-seq: measuring genomewide transcriptional elongation rates and initiation frequencies within cells

    Fuchs G., Voichek Y., Benjamin S., Gilad S., Amit I. & Oren M. (2014)
  • Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis

    Thaiss C. A., Zeevi D., Levy M., Zilberman-Schapira G., Suez J., Tengeler A. C., Abramson L., Katz M. N., Korem T., Zmora N., Kuperman Y., Biton I., Gilad S., Harmelin A., Shapiro H., Halpern Z., Segal E. & Elinav E. (2014)
  • Derivation of novel human ground state naive pluripotent stem cells

    Gafni O., Weinberger L., Mansour A. A., Manor Y. S., Chomsky E., Ben-Yosef D., Kalma Y., Viukov S., Maza I., Zviran A., Rais Y., Shipony Z., Mukamel Z., Krupalnik V., Zerbib M., Geula S., Caspi I., Schneir D., Shwartz T., Gilad S., Amann Zalcenstein D., Benjamin S., Amit I., Tanay A., Massarwa R., Novershtern N. & Hanna J. (. (2013)
  • Alternative Splicing Regulates Biogenesis of miRNAs Located across Exon-Intron Junctions

    Melamed Z., Levy A., Ashwal-Fluss R., Lev-Maor G., Mekahel K., Atias N., Gilad S., Sharan R., Levy C., Kadener S. & Ast G. (2013)
  • Deterministic direct reprogramming of somatic cells to pluripotency

    Rais Y., Zviran A., Geula S., Gafni O., Chomsky E., Viukov S., Mansour A. A., Caspi I., Krupalnik V., Zerbib M., Maza I., Mor N., Baran D., Weinberger L., Jaitin D. A., Lara Astiaso A. D., Blecher-Gonen R., Shipony Z., Mukamel Z., Hagai T., Gilad S., Amann Zalcenstein D., Tanay A., Amit I., Novershtern N. & Hanna J. (. (2013)
  • Methods and compositions for diagnosing complications of pregnancy

    Goren Y., Gilad S., Hod M. & Yogev Y. (2013)
  • Classification of the Four Main Types of Lung Cancer Using a MicroRNA-Based Diagnostic Assay

    Gilad S., Lithwick-Yanai G., Barshack I., Benjamin S., Krivitsky I., Edmonston T. B., Bibbo M., Thurm C., Horowitz L., Huang Y., Feinmesser M., Hou J. S., St Cyr B., Burnstein I., Gibori H., Dromi N., Sanden M., Kushnir M. & Aharonov R. (2012)
  • Vaccinia virus infection suppresses the cell microRNA machinery

    Grinberg M., Gilad S., Meiri E., Levy A., Isakov O., Ronen R., Shomron N., Bentwich Z. & Shemer-Avni Y. (2012)