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All Publications

  • Single-Cell RNA sequencing reveals mRNA splice isoform switching during kidney development

    Authors: Wineberg Y., Bar-Lev T. H., Futorian A., Ben-Haim N., Armon L., Ickowicz D., Oriel S., Bucris E., Yehuda Y., Pode-Shakked N., Gilad S., Benjamin S., Hohenstein P., Dekel B., Urbach A. & Kalisky T. (2020), Journal Of The American Society Of Nephrology. 31, 10, p. 2278-2291

  • PRMT1 inhibition induces differentiation of colon cancer cells

    Authors: Plotnikov A., Kozer N., Cohen G., Carvalho S., Duberstein S., Almog O., Solmesky L. J., Shurrush K. A., Babaev I., Benjamin S., Gilad S., Kupervaser M., Levin Y., Gershovits M., Ben-Avraham D. & Barr H. M. (2020), Scientific Reports. 10, 1, 20030

  • Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules

    Authors: Zviran A., Mor N., Rais Y., Gingold H., Peles S., Chomsky E., Viukov S., Buenrostro J. D., Scognamiglio R., Weinberger L., Manor Y. S., Krupalnik V., Zerbib M., Hezroni H., Jaitin D. A., Larastiaso D., Gilad S., Benjamin S., Gafni O., Mousa A., Ayyash M., Sheban D., Bayerl J., Aguilera-Castrejon A., Massarwa R., Maza I., Hanna S., Stelzer Y., Ulitsky I., Greenleaf W. J., Tanay A., Trumpp A., Amit I., Pilpel Y., Novershtern N. & Hanna J. H. (2019), Cell Stem Cell. 24, 2, p. 328-341.e9

  • mRNA-seq whole transcriptome profiling of fresh frozen versus archived fixed tissues

    Authors: Ben-Moshe N. B., Gilad S., Perry G., Benjamin S., Balint-Lahat N., Pavlovsky A., Halperin S., Markus B., Yosepovich A., Barshack I., Gal-Yam E. N., Domany E., Kaufman B. & Dadiani M. (2018), BMC Genomics. 19, 419

  • High Expression of CD200 and CD200R1 Distinguishes Stem and Progenitor Cell Populations within Mammary Repopulating Units

    Authors: Rauner G., Kudinov T., Gilad S., Hornung G. & Barash I. (2018), Stem Cell Reports. 11, 1, p. 288-302

  • A brief review of single-cell transcriptomic technologies

    Authors: Kalisky T., Oriel S., Bar-Lev T. H., Ben-Haim N., Trink A., Wineberg Y., Kanter I., Gilad S. & Pyne S. (2018), Briefings in Functional Genomics. 17, 1, p. 64-76

  • Quantitative species-level ecology of reef fish larvae via metabarcoding

    Authors: Kimmerling N., Zuqert O., Amitai G., Gurevich T., Armoza-Zvuloni R., Kolesnikov I., Berenshtein I., Melamed S., Gilad S., Benjamin S., Rivlin A., Ohavia M., Paris C. B., Holzman R., Kiflawi M. & Sorek R. (2018), Nature ecology & evolution. 2, 2, p. 306-+

  • Evolution and dissemination of the Klebsiella pneumoniae clonal group 258 throughout Israeli post-acute care hospitals, 2008-13

    Authors: Adler A., Lifshitz Z., Gordon M., Ben-David D., Khabra E., Masarwa S., Zion O., Schwaber M. J. & Carmeli Y. (2017), Journal of Antimicrobial Chemotherapy. 72, 8, p. 2219-2224

  • Coordination of Meristem Doming and the Floral Transition by Late Termination, a Kelch Repeat Protein

    Authors: Tal L., Friedlander G., Gilboa N. S., Unger T., Gilad S. & Eshed Y. (2017), Plant Cell. 29, 4, p. 681-696

  • RNA sequencing of bipolar disorder lymphoblastoid cell lines implicates the neurotrophic factor HRP-3 in lithium's clinical efficacy

    Authors: Milanesi E., Voinsky I., Hadar A., Srouji A., Maj C., Shekhtman T., Gershovits M., Gilad S., Chillotti C., Squassina A., Potash J. B., Schulze T. G., Goes F. S., Zandi P., Kelsoe J. R. & Gurwitz D. (2017), World Journal of Biological Psychiatry. p. 449-461

  • High-Resolution Dissection of Conducive Reprogramming Trajectory to Ground State Pluripotency

    Authors: Zviran A., Mor N., Rais Y., Gingold H., Peles S., Chomsky E., Viukov S., Buenrostro J. D., Weinberger L., Manor Y. S., Krupalnik V., Zerbib M., Hezroni H., Jaitin D. A., Larastiaso D., Gilad S., Benjamin S., Mousa A., Ayyash M., Sheban D., Bayerl J., Aguilera Castrejon A., Massarwa R., Maza I., Hanna S., Amit I., Stelzer Y., Ulitsky I., Greenleaf W. J., Pilpel Y., Novershtern N. & Hanna J. H. (2017), BioRxiv.

  • Derivation of novel human ground state naive pluripotent stem cells (vol 504, pg 282, 2013)

    Authors: Gafni O., Weinberger L., Mansour A. A., Manor Y. S., Chomsky E., Ben-Yosef D., Kalma Y., Viukov S., Maza I., Zviran A., Rais Y., Shipony Z., Mukamel Z., Krupalnik V., Zerbib M., Geula S., Caspi I., Schneir D., Shwartz T., Gilad S., Amann-Zalcenstein D., Benjamin S., Amit I., Tanay A., Massarwa R., Novershtern N. & Hanna J. H. (2015), Nature. 520, 7549

  • Deterministic direct reprogramming of somatic cells to pluripotency (vol 502, pg 65, 2013)

    Authors: Rais Y., Zviran A., Geula S., Gafni O., Chomsky E., Viukov S., Mansour A. A., Caspi I., Krupalnik V., Zerbib M., Maza I., Mor N., Baran D., Weinberger L., Jaitin D. A., Lara-Astiaso D., Blecher-Gonen R., Shipony Z., Mukamel Z., Hagai T., Gilad S., Amann-Zalcenstein D., Tanay A., Amit I., Novershtern N. & Hanna J. H. (2015), Nature. 520, 7549, p. 710-710

  • Simultaneous measurement of genome-wide transcription elongation speeds and rates of RNA polymerase II transition into active elongation with 4sUDRB-seq

    Authors: Fuchs G., Voichek Y., Rabani M., Benjamin S., Gilad S., Amit I. & Oren M. (2015), Nature Protocols. 10, 4, p. 605-618

  • Artificial Sweeteners Induce Glucose Intolerance by Altering the Gut Microbiota: Editorial comment

    Authors: Suez J., Korem T., Zeevi D., Zilberman-Schapira G., Thaiss C. A., Maza O., Israeli D., Zmora N., Gilad S., Weinberger A., Kuperman Y., Harmelin A., Kolodkin-Gal I., Shapiro H., Halpern Z., Segal E. & Elinav E. (2015), Obstetrical & Gynecological Survey. 70, 1, p. 31-32

  • Artificial sweeteners induce glucose intolerance by altering the gut microbiota

    Authors: Suez J., Korem T., Zeevi D., Zilberman-Schapira G., Thaiss C. A., Maza O., Israeli D., Zmora N., Gilad S., Weinberger A., Kuperman Y., Harmelin A., Kolodkin-Gal I., Shapiro H., Halpern Z., Segal E. & Elinav E. (2014), Nature. 514, 7521, p. 181-186

  • 4sUDRB-seq: measuring genomewide transcriptional elongation rates and initiation frequencies within cells

    Authors: Fuchs G., Voichek Y., Benjamin S., Gilad S., Amit I. & Oren M. (2014), GENOME BIOLOGY. 15, 5, R69

  • Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis

    Authors: Thaiss C. A., Zeevi D., Levy M., Zilberman-Schapira G., Suez J., Tengeler A. C., Abramson L., Katz M. N., Korem T., Zmora N., Kuperman Y., Biton I., Gilad S., Harmelin A., Shapiro H., Halpern Z., Segal E. & Elinav E. (2014), Cell. 159, 3, p. 514-529

  • Derivation of novel human ground state naive pluripotent stem cells

    Authors: Gafni O., Weinberger L., Mansour A. A., Manor Y. S., Chomsky E., Ben-Yosef D., Kalma Y., Viukov S., Maza I., Zviran A., Rais Y., Shipony Z., Mukamel Z., Krupalnik V., Zerbib M., Geula S., Caspi I., Schneir D., Shwartz T., Gilad S., Amann Zalcenstein D., Benjamin S., Amit I., Tanay A., Massarwa R., Novershtern N. & Hanna J. (. (2013), Nature. 504, 7479, p. 282-286

  • Alternative Splicing Regulates Biogenesis of miRNAs Located across Exon-Intron Junctions

    Authors: Melamed Z., Levy A., Ashwal-Fluss R., Lev-Maor G., Mekahel K., Atias N., Gilad S., Sharan R., Levy C., Kadener S. & Ast G. (2013), Molecular Cell. 50, 6, p. 869-881

  • Deterministic direct reprogramming of somatic cells to pluripotency

    Authors: Rais Y., Zviran A., Geula S., Gafni O., Chomsky E., Viukov S., Mansour A. A., Caspi I., Krupalnik V., Zerbib M., Maza I., Mor N., Baran D., Weinberger L., Jaitin D. A., Lara Astiaso A. D., Blecher-Gonen R., Shipony Z., Mukamel Z., Hagai T., Gilad S., Amann Zalcenstein D., Tanay A., Amit I., Novershtern N. & Hanna J. (. (2013), Nature. 502, 7469, p. 65-+

  • Methods and compositions for diagnosing complications of pregnancy

    Authors: Goren Y., Gilad S., Hod M. & Yogev Y. (2013),

  • Classification of the Four Main Types of Lung Cancer Using a MicroRNA-Based Diagnostic Assay

    Authors: Gilad S., Lithwick-Yanai G., Barshack I., Benjamin S., Krivitsky I., Edmonston T. B., Bibbo M., Thurm C., Horowitz L., Huang Y., Feinmesser M., Hou J. S., St Cyr B., Burnstein I., Gibori H., Dromi N., Sanden M., Kushnir M. & Aharonov R. (2012), Journal of Molecular Diagnostics. 14, 5, p. 510-517

  • Vaccinia virus infection suppresses the cell microRNA machinery

    Authors: Grinberg M., Gilad S., Meiri E., Levy A., Isakov O., Ronen R., Shomron N., Bentwich Z. & Shemer-Avni Y. (2012), Archives of Virology. 157, 9, p. 1719-1727