The Ilana and Pascal Mantoux Institute for Bioinformatics supports integrated data analysis from all units within the Grand-INCPM.

We can also analyze a wide range of NGS data from other facilities and/or public repositories.


  • Quantification of gene expression.
  • Differential expression and splicing.
  • Pathway enrichment including a unique collaboration with GeneCards®.

Variant Calling

  • Whole genome or whole exome.
  • Structural variants and copy number variations (CNVs).
  • Germline and Somatic.

Single Cell genomics (10x Genomics)

  • 10x Genomics).
  • Clustering and visualization of cell populations.
  • Differential expression.

Bacterial genome assembly

  • Assembly of bacterial genomes and plasmids.
  • Combining long and short reads.
  • Annotation and protein prediction.


  • Clustering and differential abundance analysis.
  • Functional analysis.
  • 16S analysis.

Additional and Custom Applications

Genome assembly, transcriptome assembly and proteogenomics, incorporating long reads data (PacBio), ChIP-seq, Methylation (RRBS), variant calling from RNA-seq, CyTOF analysis and more.